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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_004704-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 537aa MW: 58995.6 Da PI: 5.7544 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.8 | 1e-17 | 40 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l NNU_004704-RA 40 KGPWTSAEDAILVDYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 87 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE++l++++++++G++ W++ a++++ gRt++++k++w++ NNU_004704-RA 93 KGAFSQEEEKLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 136 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.872 | 35 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.36E-30 | 39 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-15 | 39 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.0E-15 | 40 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.01E-11 | 42 | 87 | No hit | No description |
PROSITE profile | PS51294 | 25.697 | 88 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 7.5E-17 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 93 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.58E-12 | 95 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-25 | 95 | 141 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MGRSTNESEE SMVLKVQTDS PSIDEGSCGG SMNGGVVLKK GPWTSAEDAI LVDYVKKHGE 60 GNWNAVQKHS GLFRCGKSCR LRWANHLRPN LKKGAFSQEE EKLIIELHAK MGNKWARMAA 120 HLPGRTDNEI KNYWNTRIKR RQRAGLPLYP PELCLQALNE SQQSQNSGEV NSGEKRHHDL 180 LQGNSYEIPD VIFDNFKANQ GALSFPSALP DISMSSMLTQ GPGSSPNYSF MPPMMHRPKR 240 LRESEALFPS YNGSITNGFP EFEQFQGDNC QKIHRPCGMS FPYDPDPSSK NPQHFGGHSL 300 LNGNFSASKP TPGSMKLELP SLQYQETDLG GWGTSTLLPP SLESVDTFIQ SPPPTGTVQS 360 DCLSPRNSGL LEALLHEAQN LSSGKNHSFE KSSNSSVVTP SDVVDSSSLN LCDTEWEEYS 420 DPISPLGRSA ASVFRSRIKP ETIENVSTPD GEKEISNRSN LSRPDALLGT DWFEQSTENG 480 NQSVVNDAIA TLLGEDFCND YKQVPARSST LPQGQGWSLG SCAWNNMPGV CHMSELP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-31 | 38 | 141 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00348 | DAP | Transfer from AT3G11440 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010251854.1 | 0.0 | PREDICTED: transcription factor GAMYB | ||||
Refseq | XP_010251855.1 | 0.0 | PREDICTED: transcription factor GAMYB | ||||
Refseq | XP_010251856.1 | 0.0 | PREDICTED: transcription factor GAMYB | ||||
Swissprot | Q0JIC2 | 1e-150 | GAM1_ORYSJ; Transcription factor GAMYB | ||||
TrEMBL | D7UD27 | 0.0 | D7UD27_VITVI; Putative uncharacterized protein | ||||
STRING | VIT_13s0067g01630.t01 | 0.0 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 1e-136 | myb domain protein 65 |